1 HisKA#1
253-319 aa · 67 aa · 10.4% of protein
Raw token
HisKA:253:8.41e-17:319:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4470_RS10715
Histidine kinase, Hybrid
Blautia faecis · GCF_013300155
ClassHKTypeHybridLength643 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300155#G4470_RS10715Stable P2CS identifier used across views.
GenomeGCF_013300155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length643 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 643 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa643 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
368-485 aa · 118 aa · 18.4% of protein
Raw token
HATPase_c:368:7.02e-28:485:118:1093 Response_reg#3
512-628 aa · 117 aa · 18.2% of protein
Raw token
Response_reg:512:6.66e-27:628:117:111- Raw architecture: HisKA:253:8.41e-17:319:67:64#HATPase_c:368:7.02e-28:485:118:109#Response_reg:512:6.66e-27:628:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300155::NZ_JAAINN010000021.1::G00014
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span12476-17624Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4470_10715RefSeq proteinWP_173716682.1
Context group ID
GCF_013300155::NZ_JAAINN010000021.1::G00014Context members
G4470_RS10715G4470_RS10725
Partner locus tags
G4470_RS10715G4470_RS10725
Partner old locus tags
G4470_10715G4470_10725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173716682.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4470_RS10715Primary locus identifier stored in the genes table.
Old locus tagG4470_10715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINN010000021.1Sequence record reported by the local genomic context database.
Genomic interval12 476-14 407 nt1 932 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 476-17 624 ntGCF_013300155::NZ_JAAINN010000021.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300155::NZ_JAAINN010000021.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINN010000021.1All displayed genes belong to this local TCS context.
Neighborhood span12 476-17 624 nt5 149 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 476 nt17 624 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4470_RS10715GCF_013300155#G4470_RS10715
HKHybridCurrent focus
12 476-14 407 nt · Reverse (-)
G4470_RS10725GCF_013300155#G4470_RS10725
HKHybrid
14 751-17 624 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS10715The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0914074
Simplified PFAM architecture for HKOC_0914074
PFAM domain coverage: 299 / 643 aa (46.5%)
1 aa643 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[253-319] | HATPase_c[369-484] | Response_reg[512-627]
- Domain count: 3
- Matched identifier: HKOC_0914074
- Positioned domains: HisKA 253-319 ; HATPase_c 369-484 ; Response_reg 512-627
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS10715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013300155
AssemblyASM1330015v1 · Contighaploid
Genome composition4 109 988 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 122 · HK 62 · RR 59CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key