1 HisKA_3#1
228-292 aa · 65 aa · 14.4% of protein
Raw token
HisKA_3:228:0.0000000000217:292:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EM849_RS04040
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698195
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698195#EM849_RS04040Stable P2CS identifier used across views.
GenomeGCF_008698195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 450 aa (32.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
358-436 aa · 79 aa · 17.6% of protein
Raw token
HATPase_c:358:0.0000773:436:85:109- Raw architecture: HisKA_3:228:0.0000000000217:292:65:68#HATPase_c:358:0.0000773:436:85:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698195::NZ_RZUJ01000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122553-124629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEM849_04040RefSeq proteinWP_223852427.1
Context group ID
GCF_008698195::NZ_RZUJ01000004.1::G00016Context members
EM849_RS04040EM849_RS04045
Partner locus tags
EM849_RS04040EM849_RS04045
Partner old locus tags
EM849_04040EM849_04045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223852427.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEM849_RS04040Primary locus identifier stored in the genes table.
Old locus tagEM849_04040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval122 553-123 905 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 553-124 629 ntGCF_008698195::NZ_RZUJ01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698195::NZ_RZUJ01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span122 553-124 629 nt2 077 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 553 nt124 629 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EM849_RS04040GCF_008698195#EM849_RS04040
HKClassicCurrent focus
122 553-123 905 nt · Forward (+)
EM849_RS04045GCF_008698195#EM849_RS04045
RRNarL
123 922-124 629 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698195#EM849_RS04040The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1965695
Simplified PFAM architecture for HKOC_1965695
PFAM domain coverage: 68 / 450 aa (15.1%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[228-295]
- Domain count: 1
- Matched identifier: HKOC_1965695
- Positioned domains: HisKA_3 228-295
Cluster members and taxonomy
Representative gene: GCF_008698195#EM849_RS04040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698195
AssemblyASM869819v1 · Contighaploid
Genome composition2 986 510 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 36 · HK 12 · RR 19CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key