1 H_kinase_N#1
9-145 aa · 137 aa · 27.8% of protein
Raw token
H_kinase_N:9:2.38e-48:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EM849_RS02940
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698195
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698195#EM849_RS02940Stable P2CS identifier used across views.
GenomeGCF_008698195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 493 aa (84.4%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation4 items
2 PAS_4#2
173-278 aa · 106 aa · 21.5% of protein
Raw token
PAS_4:173:0.00000000442:278:111:1103 HisKA_2#3
292-361 aa · 70 aa · 14.2% of protein
Raw token
HisKA_2:292:8.67e-28:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.9% of protein
Raw token
HATPase_c:388:0.00000000000000203:490:113:109- Raw architecture: H_kinase_N:9:2.38e-48:145:138:139#PAS_4:173:0.00000000442:278:111:110#HisKA_2:292:8.67e-28:361:71:76#HATPase_c:388:0.00000000000000203:490:113:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698195::NZ_RZUJ01000003.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span128225-129706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEM849_02940RefSeq proteinWP_150395115.1
Context group ID
GCF_008698195::NZ_RZUJ01000003.1::G00013Context members
EM849_RS02940
Partner locus tags
EM849_RS02940
Partner old locus tags
EM849_02940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_150395115.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEM849_RS02940Primary locus identifier stored in the genes table.
Old locus tagEM849_02940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval128 225-129 706 nt1 482 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span128 225-129 706 ntGCF_008698195::NZ_RZUJ01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698195::NZ_RZUJ01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span128 225-129 706 nt1 482 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 225 nt129 706 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EM849_RS02940GCF_008698195#EM849_RS02940
HKClassicCurrent focus
128 225-129 706 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698195#EM849_RS02940The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1516602
Simplified PFAM architecture for HKOC_1516602
PFAM domain coverage: 416 / 493 aa (84.4%)
1 aa493 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-141] | PAS_4[173-278] | HisKA_2[292-361] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1516602
- Positioned domains: GAF_PdtaS 4-141 ; PAS_4 173-278 ; HisKA_2 292-361 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_008698195#EM849_RS02940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698195
AssemblyASM869819v1 · Contighaploid
Genome composition2 986 510 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 36 · HK 12 · RR 19CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key