1 HAMP#1
35-105 aa · 71 aa · 21.1% of protein
Raw token
HAMP:35:9.53e-20:105:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EM849_RS02885
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698195
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698195#EM849_RS02885Stable P2CS identifier used across views.
GenomeGCF_008698195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 336 aa (74.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HisKA#2
109-173 aa · 65 aa · 19.3% of protein
Raw token
HisKA:109:0.000000000000064:173:65:643 HATPase_c#3
218-331 aa · 114 aa · 33.9% of protein
Raw token
HATPase_c:218:8.32e-21:331:115:109- Raw architecture: HAMP:35:9.53e-20:105:71:69#HisKA:109:0.000000000000064:173:65:64#HATPase_c:218:8.32e-21:331:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698195::NZ_RZUJ01000003.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113148-114975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEM849_02885RefSeq proteinWP_223848161.1
Context group ID
GCF_008698195::NZ_RZUJ01000003.1::G00012Context members
EM849_RS02880EM849_RS02885
Partner locus tags
EM849_RS02880EM849_RS02885
Partner old locus tags
EM849_02880EM849_02885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223848161.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEM849_RS02885Primary locus identifier stored in the genes table.
Old locus tagEM849_02885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval113 965-114 975 nt1 011 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 148-114 975 ntGCF_008698195::NZ_RZUJ01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698195::NZ_RZUJ01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span113 148-114 975 nt1 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 148 nt114 975 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EM849_RS02880GCF_008698195#EM849_RS02880
RROmpR
113 148-113 867 nt · Forward (+)
EM849_RS02885GCF_008698195#EM849_RS02885
HKClassicCurrent focus
113 965-114 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408715#EP30_RS03555Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2846913
Simplified PFAM architecture for HKOC_2846913
PFAM domain coverage: 231 / 336 aa (68.8%)
1 aa336 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[51-104] | HisKA[109-173] | HATPase_c[218-329]
- Domain count: 3
- Matched identifier: HKOC_2846913
- Positioned domains: HAMP 51-104 ; HisKA 109-173 ; HATPase_c 218-329
Cluster members and taxonomy
Representative gene: GCF_006408715#EP30_RS03555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698195
AssemblyASM869819v1 · Contighaploid
Genome composition2 986 510 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 36 · HK 12 · RR 19CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key