1 HAMP#1
211-281 aa · 71 aa · 11.7% of protein
Raw token
HAMP:211:0.00000000000017:281:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EM849_RS01965
Histidine kinase, Classic
Bifidobacterium tissieri · GCF_008698195
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698195#EM849_RS01965Stable P2CS identifier used across views.
GenomeGCF_008698195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage286 / 607 aa (47.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 HisKA#2
292-361 aa · 70 aa · 11.5% of protein
Raw token
HisKA:292:2.69e-18:361:70:643 HATPase_c#3
433-577 aa · 145 aa · 23.9% of protein
Raw token
HATPase_c:433:8.72e-21:577:145:109- Raw architecture: HAMP:211:0.00000000000017:281:71:69#HisKA:292:2.69e-18:361:70:64#HATPase_c:433:8.72e-21:577:145:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698195::NZ_RZUJ01000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127490-130061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEM849_01965RefSeq proteinWP_223848186.1
Context group ID
GCF_008698195::NZ_RZUJ01000002.1::G00009Context members
EM849_RS01960EM849_RS01965
Partner locus tags
EM849_RS01960EM849_RS01965
Partner old locus tags
EM849_01960EM849_01965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223848186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEM849_RS01965Primary locus identifier stored in the genes table.
Old locus tagEM849_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval128 238-130 061 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span127 490-130 061 ntGCF_008698195::NZ_RZUJ01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698195::NZ_RZUJ01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span127 490-130 061 nt2 572 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 490 nt130 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EM849_RS01960GCF_008698195#EM849_RS01960
RROmpR
127 490-128 233 nt · Forward (+)
EM849_RS01965GCF_008698195#EM849_RS01965
HKClassicCurrent focus
128 238-130 061 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698165#EMO89_RS06340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1020216
Simplified PFAM architecture for HKOC_1020216
PFAM domain coverage: 265 / 607 aa (43.7%)
1 aa607 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[232-281] | HisKA[293-361] | HATPase_c[433-578]
- Domain count: 3
- Matched identifier: HKOC_1020216
- Positioned domains: HAMP 232-281 ; HisKA 293-361 ; HATPase_c 433-578
Cluster members and taxonomy
Representative gene: GCF_008698165#EMO89_RS06340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698195
AssemblyASM869819v1 · Contighaploid
Genome composition2 986 510 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 36 · HK 12 · RR 19CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key