1 SBP_bac_3#1
52-241 aa · 190 aa · 20.2% of protein
Raw token
SBP_bac_3:52:2.41e-30:241:200:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV57_RS03325
Histidine kinase, Hybrid
Faecalibacterium sp. AF10-46 · GCF_003604105
ClassHKTypeHybridLength942 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003604105#DWV57_RS03325Stable P2CS identifier used across views.
GenomeGCF_003604105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length942 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage697 / 942 aa (74.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa942 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-485 aa · 204 aa · 21.7% of protein
Raw token
SBP_bac_3:282:0.00000000232:485:217:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:1.72e-18:631:66:644 HATPase_c#4
678-796 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:678:9.16e-29:796:120:1095 Response_reg#5
819-936 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:819:1.3e-30:936:118:111- Raw architecture: SBP_bac_3:52:2.41e-30:241:200:224#SBP_bac_3:282:0.00000000232:485:217:224#HisKA:566:1.72e-18:631:66:64#HATPase_c:678:9.16e-29:796:120:109#Response_reg:819:1.3e-30:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003604105::NZ_QVGY01000002.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span28162-30990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV57_03315RefSeq proteinWP_120019955.1
Context group ID
GCF_003604105::NZ_QVGY01000002.1::G00011Context members
DWV57_RS03325
Partner locus tags
DWV57_RS03325
Partner old locus tags
DWV57_03315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120019955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV57_RS03325Primary locus identifier stored in the genes table.
Old locus tagDWV57_03315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVGY01000002.1Sequence record reported by the local genomic context database.
Genomic interval28 162-30 990 nt2 829 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 162-30 990 ntGCF_003604105::NZ_QVGY01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003604105::NZ_QVGY01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVGY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span28 162-30 990 nt2 829 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 162 nt30 990 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV57_RS03325GCF_003604105#DWV57_RS03325
HKHybridCurrent focus
28 162-30 990 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003604105#DWV57_RS03325The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0338162
Simplified PFAM architecture for HKOC_0338162
PFAM domain coverage: 494 / 942 aa (52.4%)
1 aa942 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 4
- Matched identifier: HKOC_0338162
- Positioned domains: SBP_bac_3 49-241 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_003604105#DWV57_RS03325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 302 955 · GCF_003604105
AssemblyASM360410v1 · Scaffoldhaploid
Genome composition2 898 008 bp · 56,0% GCFaecalibacterium sp. AF10-46
Signal transduction countsGenes 47 · HK 21 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key