1 HAMP#1
298-365 aa · 68 aa · 11.2% of protein
Raw token
HAMP:298:0.00000000456:365:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV57_RS00175
Histidine kinase, Classic
Faecalibacterium sp. AF10-46 · GCF_003604105
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003604105#DWV57_RS00175Stable P2CS identifier used across views.
GenomeGCF_003604105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 605 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:382:1.89e-29:461:80:803 HATPase_c#3
484-593 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:484:0.0000000000000011:593:111:109- Raw architecture: HAMP:298:0.00000000456:365:68:69#His_kinase:382:1.89e-29:461:80:80#HATPase_c:484:0.0000000000000011:593:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003604105::NZ_QVGY01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27899-30953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV57_00175RefSeq proteinWP_118528257.1
Context group ID
GCF_003604105::NZ_QVGY01000001.1::G00001Context members
DWV57_RS00170DWV57_RS00175
Partner locus tags
DWV57_RS00170DWV57_RS00175
Partner old locus tags
DWV57_00170DWV57_00175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118528257.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV57_RS00175Primary locus identifier stored in the genes table.
Old locus tagDWV57_00175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVGY01000001.1Sequence record reported by the local genomic context database.
Genomic interval29 136-30 953 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 899-30 953 ntGCF_003604105::NZ_QVGY01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003604105::NZ_QVGY01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVGY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span27 899-30 953 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 899 nt30 953 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV57_RS00170GCF_003604105#DWV57_RS00170
RRunclassified
27 899-29 161 nt · Reverse (-)
DWV57_RS00175GCF_003604105#DWV57_RS00175
HKClassicCurrent focus
29 136-30 953 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478175#DXA66_RS08870Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1029408
Simplified PFAM architecture for HKOC_1029408
PFAM domain coverage: 234 / 605 aa (38.7%)
1 aa605 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[319-365] | His_kinase[383-460] | HATPase_c[484-592]
- Domain count: 3
- Matched identifier: HKOC_1029408
- Positioned domains: HAMP 319-365 ; His_kinase 383-460 ; HATPase_c 484-592
Cluster members and taxonomy
Representative gene: GCF_003478175#DXA66_RS08870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 302 955 · GCF_003604105
AssemblyASM360410v1 · Scaffoldhaploid
Genome composition2 898 008 bp · 56,0% GCFaecalibacterium sp. AF10-46
Signal transduction countsGenes 47 · HK 21 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key