1 PBPb#1
46-262 aa · 217 aa · 22.9% of protein
Raw token
PBPb:46:3.16e-29:262:230:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV57_RS00740
Histidine kinase, Hybrid
Faecalibacterium sp. AF10-46 · GCF_003604105
ClassHKTypeHybridLength948 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003604105#DWV57_RS00740Stable P2CS identifier used across views.
GenomeGCF_003604105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length948 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage718 / 948 aa (75.7%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa948 aa
Domain-by-domain annotation5 items
2 PBPb#2
284-488 aa · 205 aa · 21.6% of protein
Raw token
PBPb:284:9e-17:488:216:2193 HisKA#3
573-638 aa · 66 aa · 7.0% of protein
Raw token
HisKA:573:2.51e-17:638:66:644 HATPase_c#4
685-800 aa · 116 aa · 12.2% of protein
Raw token
HATPase_c:685:3.67e-29:800:116:1095 Response_reg#5
828-941 aa · 114 aa · 12.0% of protein
Raw token
Response_reg:828:1.48e-30:941:114:111- Raw architecture: PBPb:46:3.16e-29:262:230:219#PBPb:284:9e-17:488:216:219#HisKA:573:2.51e-17:638:66:64#HATPase_c:685:3.67e-29:800:116:109#Response_reg:828:1.48e-30:941:114:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003604105::NZ_QVGY01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span134269-137115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV57_00740RefSeq proteinWP_120019634.1
Context group ID
GCF_003604105::NZ_QVGY01000001.1::G00003Context members
DWV57_RS00740
Partner locus tags
DWV57_RS00740
Partner old locus tags
DWV57_00740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120019634.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV57_RS00740Primary locus identifier stored in the genes table.
Old locus tagDWV57_00740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVGY01000001.1Sequence record reported by the local genomic context database.
Genomic interval134 269-137 115 nt2 847 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 269-137 115 ntGCF_003604105::NZ_QVGY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003604105::NZ_QVGY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVGY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span134 269-137 115 nt2 847 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 269 nt137 115 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV57_RS00740GCF_003604105#DWV57_RS00740
HKHybridCurrent focus
134 269-137 115 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003604105#DWV57_RS00740The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0330868
Simplified PFAM architecture for HKOC_0330868
PFAM domain coverage: 500 / 948 aa (52.7%)
1 aa948 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[47-248] | HisKA[573-638] | HATPase_c[686-801] | Response_reg[828-943]
- Domain count: 4
- Matched identifier: HKOC_0330868
- Positioned domains: SBP_bac_3 47-248 ; HisKA 573-638 ; HATPase_c 686-801 ; Response_reg 828-943
Cluster members and taxonomy
Representative gene: GCF_003604105#DWV57_RS00740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 302 955 · GCF_003604105
AssemblyASM360410v1 · Scaffoldhaploid
Genome composition2 898 008 bp · 56,0% GCFaecalibacterium sp. AF10-46
Signal transduction countsGenes 47 · HK 21 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key