1 Response_reg#1
3-123 aa · 121 aa · 50.4% of protein
Raw token
Response_reg:3:0.00000000000384:123:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV57_RS01895
Response regulator LytTR family
Faecalibacterium sp. AF10-46 · GCF_003604105
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003604105#DWV57_RS01895Stable P2CS identifier used across views.
GenomeGCF_003604105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 240 aa (87.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-229 aa · 89 aa · 37.1% of protein
Raw token
LytTR:141:4.47e-16:229:94:98- Raw architecture: Response_reg:3:0.00000000000384:123:123:111#LytTR:141:4.47e-16:229:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003604105::NZ_QVGY01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span387495-388217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV57_01890RefSeq proteinWP_120019750.1
Context group ID
GCF_003604105::NZ_QVGY01000001.1::G00004Context members
DWV57_RS01895
Partner locus tags
DWV57_RS01895
Partner old locus tags
DWV57_01890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120019750.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV57_RS01895Primary locus identifier stored in the genes table.
Old locus tagDWV57_01890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVGY01000001.1Sequence record reported by the local genomic context database.
Genomic interval387 495-388 217 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span387 495-388 217 ntGCF_003604105::NZ_QVGY01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003604105::NZ_QVGY01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVGY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span387 495-388 217 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
387 495 nt388 217 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV57_RS01895GCF_003604105#DWV57_RS01895
RRLytTRCurrent focus
387 495-388 217 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003604105#DWV57_RS01895The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888507
Simplified PFAM architecture for RROC_0888507
PFAM domain coverage: 192 / 240 aa (80.0%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-106] | LytTR[141-228]
- Domain count: 2
- Matched identifier: RROC_0888507
- Positioned domains: Response_reg 3-106 ; Response_reg 3-106 ; LytTR 141-228 ; LytTR 141-228
Cluster members and taxonomy
Representative gene: GCF_003604105#DWV57_RS01895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 302 955 · GCF_003604105
AssemblyASM360410v1 · Scaffoldhaploid
Genome composition2 898 008 bp · 56,0% GCFaecalibacterium sp. AF10-46
Signal transduction countsGenes 47 · HK 21 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key