1 Response_reg#1
3-113 aa · 111 aa · 39.6% of protein
Raw token
Response_reg:3:6.19e-23:113:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV57_RS00240
Response regulator, unclassified
Faecalibacterium sp. AF10-46 · GCF_003604105
ClassRRTypeunclassifiedLength280 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003604105#DWV57_RS00240Stable P2CS identifier used across views.
GenomeGCF_003604105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length280 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 280 aa (39.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa280 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.19e-23:113:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003604105::NZ_QVGY01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46066-46908Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV57_00240RefSeq proteinWP_120019592.1
Context group ID
GCF_003604105::NZ_QVGY01000001.1::G00002Context members
DWV57_RS00240
Partner locus tags
DWV57_RS00240
Partner old locus tags
DWV57_00240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120019592.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV57_RS00240Primary locus identifier stored in the genes table.
Old locus tagDWV57_00240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVGY01000001.1Sequence record reported by the local genomic context database.
Genomic interval46 066-46 908 nt843 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 066-46 908 ntGCF_003604105::NZ_QVGY01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003604105::NZ_QVGY01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVGY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span46 066-46 908 nt843 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 066 nt46 908 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV57_RS00240GCF_003604105#DWV57_RS00240
RRunclassifiedCurrent focus
46 066-46 908 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003603345#DW937_RS00335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0597139
Simplified PFAM architecture for RROC_0597139
PFAM domain coverage: 110 / 280 aa (39.3%)
1 aa280 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0597139
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_003603345#DW937_RS00335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 302 955 · GCF_003604105
AssemblyASM360410v1 · Scaffoldhaploid
Genome composition2 898 008 bp · 56,0% GCFaecalibacterium sp. AF10-46
Signal transduction countsGenes 47 · HK 21 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key