1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:3.78e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS03580
Response regulator, unclassified
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS03580Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 392 aa (49.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.00000000209:338:42:423 HTH_AraC#3
349-386 aa · 38 aa · 9.7% of protein
Raw token
HTH_AraC:349:0.000000089:386:41:42- Raw architecture: Response_reg:4:3.78e-31:115:112:111#HTH_AraC:297:0.00000000209:338:42:42#HTH_AraC:349:0.000000089:386:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000003.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191830-194807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_03580RefSeq proteinWP_118578095.1
Context group ID
GCF_003480145::NZ_QUIO01000003.1::G00060Context members
DW904_RS03580DW904_RS03585
Partner locus tags
DW904_RS03580DW904_RS03585
Partner old locus tags
DW904_03580DW904_03585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118578095.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS03580Primary locus identifier stored in the genes table.
Old locus tagDW904_03580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000003.1Sequence record reported by the local genomic context database.
Genomic interval191 830-193 008 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191 830-194 807 ntGCF_003480145::NZ_QUIO01000003.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000003.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span191 830-194 807 nt2 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 830 nt194 807 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS03580GCF_003480145#DW904_RS03580
RRunclassifiedCurrent focus
191 830-193 008 nt · Reverse (-)
DW904_RS03585GCF_003480145#DW904_RS03585
HKClassic
193 038-194 807 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS03580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402563
Simplified PFAM architecture for RROC_0402563
PFAM domain coverage: 189 / 392 aa (48.2%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[297-338] | HTH_AraC[352-386]
- Domain count: 3
- Matched identifier: RROC_0402563
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_AraC 297-338 ; HTH_AraC 297-338 ; HTH_AraC 352-386 ; HTH_AraC 352-386
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key