1 Response_reg#1
6-115 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:6:1.79e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS03495
Response regulator OmpR family
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS03495Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:153:3.89e-24:229:77:77- Raw architecture: Response_reg:6:1.79e-38:115:111:111#Trans_reg_C:153:3.89e-24:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000003.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173963-176651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_03495RefSeq proteinWP_118578082.1
Context group ID
GCF_003480145::NZ_QUIO01000003.1::G00059Context members
DW904_RS03490DW904_RS03495
Partner locus tags
DW904_RS03490DW904_RS03495
Partner old locus tags
DW904_03490DW904_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118578082.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H3L5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H3L5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS03495Primary locus identifier stored in the genes table.
Old locus tagDW904_03495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000003.1Sequence record reported by the local genomic context database.
Genomic interval175 932-176 651 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 963-176 651 ntGCF_003480145::NZ_QUIO01000003.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000003.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span173 963-176 651 nt2 689 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 963 nt176 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS03490GCF_003480145#DW904_RS03490
HKClassic
173 963-175 939 nt · Forward (+)
DW904_RS03495GCF_003480145#DW904_RS03495
RROmpRCurrent focus
175 932-176 651 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS03495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0913042
Simplified PFAM architecture for RROC_0913042
PFAM domain coverage: 187 / 239 aa (78.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_0913042
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS03495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key