1 GAF_3#1
291-411 aa · 121 aa · 18.4% of protein
Raw token
GAF_3:291:0.0000531:411:126:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS03490
Histidine kinase, Classic
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeClassicLength658 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS03490Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 658 aa (45.9%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa658 aa
Domain-by-domain annotation3 items
2 HisKA#2
431-498 aa · 68 aa · 10.3% of protein
Raw token
HisKA:431:0.00000000000809:498:68:643 HATPase_c#3
541-653 aa · 113 aa · 17.2% of protein
Raw token
HATPase_c:541:2.03e-31:653:113:109- Raw architecture: GAF_3:291:0.0000531:411:126:129#HisKA:431:0.00000000000809:498:68:64#HATPase_c:541:2.03e-31:653:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000003.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173963-176651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_03490RefSeq proteinWP_118578081.1
Context group ID
GCF_003480145::NZ_QUIO01000003.1::G00059Context members
DW904_RS03490DW904_RS03495
Partner locus tags
DW904_RS03490DW904_RS03495
Partner old locus tags
DW904_03490DW904_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118578081.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS03490Primary locus identifier stored in the genes table.
Old locus tagDW904_03490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000003.1Sequence record reported by the local genomic context database.
Genomic interval173 963-175 939 nt1 977 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 963-176 651 ntGCF_003480145::NZ_QUIO01000003.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000003.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span173 963-176 651 nt2 689 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 963 nt176 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS03490GCF_003480145#DW904_RS03490
HKClassicCurrent focus
173 963-175 939 nt · Forward (+)
DW904_RS03495GCF_003480145#DW904_RS03495
RROmpR
175 932-176 651 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS03490The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0877033
Simplified PFAM architecture for HKOC_0877033
PFAM domain coverage: 287 / 658 aa (43.6%)
1 aa658 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[161-268] | HisKA[431-498] | HATPase_c[542-652]
- Domain count: 3
- Matched identifier: HKOC_0877033
- Positioned domains: DUF4118 161-268 ; HisKA 431-498 ; HATPase_c 542-652
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS03490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key