1 Response_reg#1
7-120 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:7:0.000000000000053:120:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS02400
Response regulator LytTR family
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS02400Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 246 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 34.6% of protein
Raw token
LytTR:145:0.00000000000000656:229:90:98- Raw architecture: Response_reg:7:0.000000000000053:120:117:111#LytTR:145:0.00000000000000656:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000002.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span155834-156574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_02400RefSeq proteinWP_187565354.1
Context group ID
GCF_003480145::NZ_QUIO01000002.1::G00038Context members
DW904_RS02400
Partner locus tags
DW904_RS02400
Partner old locus tags
DW904_02400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_187565354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS02400Primary locus identifier stored in the genes table.
Old locus tagDW904_02400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000002.1Sequence record reported by the local genomic context database.
Genomic interval155 834-156 574 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 834-156 574 ntGCF_003480145::NZ_QUIO01000002.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000002.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span155 834-156 574 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 834 nt156 574 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS02400GCF_003480145#DW904_RS02400
RRLytTRCurrent focus
155 834-156 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS02400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0774389
Simplified PFAM architecture for RROC_0774389
PFAM domain coverage: 193 / 246 aa (78.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-119] | LytTR[143-228]
- Domain count: 2
- Matched identifier: RROC_0774389
- Positioned domains: Response_reg 13-119 ; Response_reg 13-119 ; LytTR 143-228 ; LytTR 143-228
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS02400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key