1 HisKA#1
198-263 aa · 66 aa · 15.4% of protein
Raw token
HisKA:198:0.00000000000000311:263:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS02310
Histidine kinase, Classic
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS02310Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 428 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-422 aa · 115 aa · 26.9% of protein
Raw token
HATPase_c:308:2.24e-18:422:116:109- Raw architecture: HisKA:198:0.00000000000000311:263:66:64#HATPase_c:308:2.24e-18:422:116:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000002.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span130115-132077Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_02310RefSeq proteinWP_118577890.1
Context group ID
GCF_003480145::NZ_QUIO01000002.1::G00037Context members
DW904_RS02305DW904_RS02310
Partner locus tags
DW904_RS02305DW904_RS02310
Partner old locus tags
DW904_02305DW904_02310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577890.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS02310Primary locus identifier stored in the genes table.
Old locus tagDW904_02310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000002.1Sequence record reported by the local genomic context database.
Genomic interval130 791-132 077 nt1 287 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span130 115-132 077 ntGCF_003480145::NZ_QUIO01000002.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000002.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span130 115-132 077 nt1 963 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 115 nt132 077 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS02305GCF_003480145#DW904_RS02305
RROmpR
130 115-130 801 nt · Forward (+)
DW904_RS02310GCF_003480145#DW904_RS02310
HKClassicCurrent focus
130 791-132 077 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS02310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2191299
Simplified PFAM architecture for HKOC_2191299
PFAM domain coverage: 177 / 428 aa (41.4%)
1 aa428 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-262] | HATPase_c[310-422]
- Domain count: 2
- Matched identifier: HKOC_2191299
- Positioned domains: HisKA 199-262 ; HATPase_c 310-422
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS02310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key