1 HisKA#1
1-67 aa · 67 aa · 17.1% of protein
Raw token
HisKA:1:3.59e-17:67:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS01885
Histidine kinase, Hybrid
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeHybridLength391 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS01885Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 391 aa (77.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
116-233 aa · 118 aa · 30.2% of protein
Raw token
HATPase_c:116:1.18e-27:233:118:1093 Response_reg#3
260-376 aa · 117 aa · 29.9% of protein
Raw token
Response_reg:260:2.65e-26:376:117:111- Raw architecture: HisKA:1:3.59e-17:67:67:64#HATPase_c:116:1.18e-27:233:118:109#Response_reg:260:2.65e-26:376:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000002.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50558-51733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_01885RefSeq proteinWP_118577828.1
Context group ID
GCF_003480145::NZ_QUIO01000002.1::G00033Context members
DW904_RS01885
Partner locus tags
DW904_RS01885
Partner old locus tags
DW904_01885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS01885Primary locus identifier stored in the genes table.
Old locus tagDW904_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000002.1Sequence record reported by the local genomic context database.
Genomic interval50 558-51 733 nt1 176 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 558-51 733 ntGCF_003480145::NZ_QUIO01000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span50 558-51 733 nt1 176 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 558 nt51 733 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS01885GCF_003480145#DW904_RS01885
HKHybridCurrent focus
50 558-51 733 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027662325#PGQ38_RS18520Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0711438
Simplified PFAM architecture for HKOC_0711438
PFAM domain coverage: 299 / 731 aa (40.9%)
1 aa731 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-407] | HATPase_c[457-572] | Response_reg[600-715]
- Domain count: 3
- Matched identifier: HKOC_0711438
- Positioned domains: HisKA 341-407 ; HATPase_c 457-572 ; Response_reg 600-715
Cluster members and taxonomy
Representative gene: GCF_027662325#PGQ38_RS18520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key