1 dCache_1#1
46-291 aa · 246 aa · 40.7% of protein
Raw token
dCache_1:46:1.49e-17:291:250:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS01320
Histidine kinase, Classic
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS01320Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage505 / 604 aa (83.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation4 items
2 HAMP#2
310-380 aa · 71 aa · 11.8% of protein
Raw token
HAMP:310:0.00000000000000142:380:71:693 His_kinase#3
395-474 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:395:4.58e-35:474:80:804 HATPase_c#4
490-597 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:490:2.71e-17:597:112:109- Raw architecture: dCache_1:46:1.49e-17:291:250:195#HAMP:310:0.00000000000000142:380:71:69#His_kinase:395:4.58e-35:474:80:80#HATPase_c:490:2.71e-17:597:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000001.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span313272-315086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_01320RefSeq proteinWP_118577752.1
Context group ID
GCF_003480145::NZ_QUIO01000001.1::G00012Context members
DW904_RS01320
Partner locus tags
DW904_RS01320
Partner old locus tags
DW904_01320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577752.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS01320Primary locus identifier stored in the genes table.
Old locus tagDW904_01320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000001.1Sequence record reported by the local genomic context database.
Genomic interval313 272-315 086 nt1 815 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span313 272-315 086 ntGCF_003480145::NZ_QUIO01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span313 272-315 086 nt1 815 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
313 272 nt315 086 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS01320GCF_003480145#DW904_RS01320
HKClassicCurrent focus
313 272-315 086 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS01320The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033770
Simplified PFAM architecture for HKOC_1033770
PFAM domain coverage: 478 / 604 aa (79.1%)
1 aa604 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[54-291] | HAMP[326-380] | His_kinase[395-474] | HATPase_c[492-596]
- Domain count: 4
- Matched identifier: HKOC_1033770
- Positioned domains: dCache_1 54-291 ; HAMP 326-380 ; His_kinase 395-474 ; HATPase_c 492-596
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key