1 dCache_1#1
129-238 aa · 110 aa · 20.1% of protein
Raw token
dCache_1:129:0.0000195:238:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS01280
Histidine kinase, Classic
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeClassicLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS01280Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage366 / 548 aa (66.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation4 items
2 HAMP#2
255-324 aa · 70 aa · 12.8% of protein
Raw token
HAMP:255:0.0000000119:324:71:693 His_kinase#3
339-418 aa · 80 aa · 14.6% of protein
Raw token
His_kinase:339:1.1e-27:418:80:804 HATPase_c#4
438-543 aa · 106 aa · 19.3% of protein
Raw token
HATPase_c:438:0.000000000000333:543:109:109- Raw architecture: dCache_1:129:0.0000195:238:116:195#HAMP:255:0.0000000119:324:71:69#His_kinase:339:1.1e-27:418:80:80#HATPase_c:438:0.000000000000333:543:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span299847-303291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_01280RefSeq proteinWP_243110248.1
Context group ID
GCF_003480145::NZ_QUIO01000001.1::G00011Context members
DW904_RS01275DW904_RS01280
Partner locus tags
DW904_RS01275DW904_RS01280
Partner old locus tags
DW904_01275DW904_01280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243110248.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS01280Primary locus identifier stored in the genes table.
Old locus tagDW904_01280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000001.1Sequence record reported by the local genomic context database.
Genomic interval301 645-303 291 nt1 647 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span299 847-303 291 ntGCF_003480145::NZ_QUIO01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span299 847-303 291 nt3 445 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
299 847 nt303 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS01275GCF_003480145#DW904_RS01275
RRunclassified
299 847-301 394 nt · Forward (+)
DW904_RS01280GCF_003480145#DW904_RS01280
HKClassicCurrent focus
301 645-303 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS01280The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1299332
Simplified PFAM architecture for HKOC_1299332
PFAM domain coverage: 184 / 548 aa (33.6%)
1 aa548 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[339-417] | HATPase_c[438-542]
- Domain count: 2
- Matched identifier: HKOC_1299332
- Positioned domains: His_kinase 339-417 ; HATPase_c 438-542
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key