1 HisKA#1
85-146 aa · 62 aa · 20.8% of protein
Raw token
HisKA:85:0.0000000000504:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS10205
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS10205Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 298 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-298 aa · 108 aa · 36.2% of protein
Raw token
HATPase_c:191:7.49e-28:298:108:109- Raw architecture: HisKA:85:0.0000000000504:146:62:64#HATPase_c:191:7.49e-28:298:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000011.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81622-83198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_10190RefSeq proteinWP_118381333.1
Context group ID
GCF_003468475::NZ_QSID01000011.1::G00008Context members
DW833_RS10200DW833_RS10205
Partner locus tags
DW833_RS10200DW833_RS10205
Partner old locus tags
DW833_10185DW833_10190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118381333.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B4G0Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B4G0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS10205Primary locus identifier stored in the genes table.
Old locus tagDW833_10190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000011.1Sequence record reported by the local genomic context database.
Genomic interval82 302-83 198 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 622-83 198 ntGCF_003468475::NZ_QSID01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000011.1All displayed genes belong to this local TCS context.
Neighborhood span81 622-83 198 nt1 577 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 622 nt83 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS10200GCF_003468475#DW833_RS10200
RROmpR
81 622-82 305 nt · Forward (+)
DW833_RS10205GCF_003468475#DW833_RS10205
HKClassicCurrent focus
82 302-83 198 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS10205The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888947
Simplified PFAM architecture for HKOC_2888947
PFAM domain coverage: 169 / 298 aa (56.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-297]
- Domain count: 2
- Matched identifier: HKOC_2888947
- Positioned domains: HisKA 85-146 ; HATPase_c 191-297
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS10205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key