1 HisKA#1
530-596 aa · 67 aa · 7.4% of protein
Raw token
HisKA:530:2.91e-16:596:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS00305
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeHybridLength905 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468475#DW833_RS00305Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length905 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 905 aa (33.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa905 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
645-762 aa · 118 aa · 13.0% of protein
Raw token
HATPase_c:645:5.42e-26:762:118:1093 Response_reg#3
784-900 aa · 117 aa · 12.9% of protein
Raw token
Response_reg:784:1.81e-28:900:117:111- Raw architecture: HisKA:530:2.91e-16:596:67:64#HATPase_c:645:5.42e-26:762:118:109#Response_reg:784:1.81e-28:900:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468475::NZ_QSID01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72755-75472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_00305RefSeq proteinWP_118380287.1
Context group ID
GCF_003468475::NZ_QSID01000001.1::G00002Context members
DW833_RS00305
Partner locus tags
DW833_RS00305
Partner old locus tags
DW833_00305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118380287.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B992Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B992_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS00305Primary locus identifier stored in the genes table.
Old locus tagDW833_00305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000001.1Sequence record reported by the local genomic context database.
Genomic interval72 755-75 472 nt2 718 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 755-75 472 ntGCF_003468475::NZ_QSID01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000001.1All displayed genes belong to this local TCS context.
Neighborhood span72 755-75 472 nt2 718 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 755 nt75 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW833_RS00305GCF_003468475#DW833_RS00305
HKHybridCurrent focus
72 755-75 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS00305The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0398839
Simplified PFAM architecture for HKOC_0398839
PFAM domain coverage: 300 / 905 aa (33.1%)
1 aa905 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[530-596] | HATPase_c[646-761] | Response_reg[784-900]
- Domain count: 3
- Matched identifier: HKOC_0398839
- Positioned domains: HisKA 530-596 ; HATPase_c 646-761 ; Response_reg 784-900
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS00305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key