1 HAMP#1
155-230 aa · 76 aa · 16.7% of protein
Raw token
HAMP:155:0.00000000215:230:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS01985
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS01985Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 455 aa (54.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-298 aa · 62 aa · 13.6% of protein
Raw token
HisKA:237:0.000000000000547:298:62:643 HATPase_c#3
348-455 aa · 108 aa · 23.7% of protein
Raw token
HATPase_c:348:1.54e-31:455:108:109- Raw architecture: HAMP:155:0.00000000215:230:76:69#HisKA:237:0.000000000000547:298:62:64#HATPase_c:348:1.54e-31:455:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116312-118350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_01980RefSeq proteinWP_118380419.1
Context group ID
GCF_003468475::NZ_QSID01000002.1::G00023Context members
DW833_RS01980DW833_RS01985
Partner locus tags
DW833_RS01980DW833_RS01985
Partner old locus tags
DW833_01975DW833_01980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118380419.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B8N1Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B8N1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS01985Primary locus identifier stored in the genes table.
Old locus tagDW833_01980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000002.1Sequence record reported by the local genomic context database.
Genomic interval116 983-118 350 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 312-118 350 ntGCF_003468475::NZ_QSID01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000002.1All displayed genes belong to this local TCS context.
Neighborhood span116 312-118 350 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 312 nt118 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS01980GCF_003468475#DW833_RS01980
RROmpR
116 312-116 980 nt · Forward (+)
DW833_RS01985GCF_003468475#DW833_RS01985
HKClassicCurrent focus
116 983-118 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS01985The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1902551
Simplified PFAM architecture for HKOC_1902551
PFAM domain coverage: 171 / 455 aa (37.6%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-298] | HATPase_c[348-455]
- Domain count: 2
- Matched identifier: HKOC_1902551
- Positioned domains: HisKA 236-298 ; HATPase_c 348-455
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS01985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key