1 dCache_1#1
158-306 aa · 149 aa · 23.8% of protein
Raw token
dCache_1:158:0.0000000000202:306:157:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS00470
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS00470Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage335 / 627 aa (53.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation3 items
2 His_kinase#2
408-487 aa · 80 aa · 12.8% of protein
Raw token
His_kinase:408:2.66e-33:487:80:803 HATPase_c#3
503-608 aa · 106 aa · 16.9% of protein
Raw token
HATPase_c:503:1.26e-17:608:109:109- Raw architecture: dCache_1:158:0.0000000000202:306:157:195#His_kinase:408:2.66e-33:487:80:80#HATPase_c:503:1.26e-17:608:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117473-120941Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_00470RefSeq proteinWP_172677253.1
Context group ID
GCF_003468475::NZ_QSID01000001.1::G00003Context members
DW833_RS00465DW833_RS00470
Partner locus tags
DW833_RS00465DW833_RS00470
Partner old locus tags
DW833_00465DW833_00470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172677253.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZQN4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZQN4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS00470Primary locus identifier stored in the genes table.
Old locus tagDW833_00470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000001.1Sequence record reported by the local genomic context database.
Genomic interval119 058-120 941 nt1 884 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 473-120 941 ntGCF_003468475::NZ_QSID01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000001.1All displayed genes belong to this local TCS context.
Neighborhood span117 473-120 941 nt3 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 473 nt120 941 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS00465GCF_003468475#DW833_RS00465
RRunclassified
117 473-119 071 nt · Forward (+)
DW833_RS00470GCF_003468475#DW833_RS00470
HKClassicCurrent focus
119 058-120 941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405175#AQ986_RS03080Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0955440
Simplified PFAM architecture for HKOC_0955440
PFAM domain coverage: 420 / 627 aa (67.0%)
1 aa627 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[71-306] | His_kinase[409-487] | HATPase_c[505-609]
- Domain count: 3
- Matched identifier: HKOC_0955440
- Positioned domains: dCache_1 71-306 ; His_kinase 409-487 ; HATPase_c 505-609
Cluster members and taxonomy
Representative gene: GCF_001405175#AQ986_RS03080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key