1 Response_reg#1
5-117 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:5:3.69e-26:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS00465
Response regulator, unclassified
Anaerobutyricum hallii · GCF_003468475
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS00465Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 532 aa (35.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-477 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:435:0.000000000799:477:43:423 HTH_AraC#3
497-527 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:497:0.0000000566:527:31:42- Raw architecture: Response_reg:5:3.69e-26:117:113:111#HTH_AraC:435:0.000000000799:477:43:42#HTH_AraC:497:0.0000000566:527:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117473-120941Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_00465RefSeq proteinWP_118380296.1
Context group ID
GCF_003468475::NZ_QSID01000001.1::G00003Context members
DW833_RS00465DW833_RS00470
Partner locus tags
DW833_RS00465DW833_RS00470
Partner old locus tags
DW833_00465DW833_00470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118380296.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B9C9Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B9C9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS00465Primary locus identifier stored in the genes table.
Old locus tagDW833_00465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000001.1Sequence record reported by the local genomic context database.
Genomic interval117 473-119 071 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 473-120 941 ntGCF_003468475::NZ_QSID01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000001.1All displayed genes belong to this local TCS context.
Neighborhood span117 473-120 941 nt3 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 473 nt120 941 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS00465GCF_003468475#DW833_RS00465
RRunclassifiedCurrent focus
117 473-119 071 nt · Forward (+)
DW833_RS00470GCF_003468475#DW833_RS00470
HKClassic
119 058-120 941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS00465The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108266
Simplified PFAM architecture for RROC_0108266
PFAM domain coverage: 321 / 532 aa (60.3%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[158-289] | HTH_18[450-527]
- Domain count: 3
- Matched identifier: RROC_0108266
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 158-289 ; GGDEF_2 158-289 ; HTH_18 450-527 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key