1 Response_reg#1
6-113 aa · 108 aa · 47.6% of protein
Raw token
Response_reg:6:2.28e-30:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS10200
Response regulator OmpR family
Anaerobutyricum hallii · GCF_003468475
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS10200Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 227 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.0% of protein
Raw token
Trans_reg_C:147:1.21e-29:221:75:77- Raw architecture: Response_reg:6:2.28e-30:113:109:111#Trans_reg_C:147:1.21e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000011.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81622-83198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_10185RefSeq proteinWP_118381332.1
Context group ID
GCF_003468475::NZ_QSID01000011.1::G00008Context members
DW833_RS10200DW833_RS10205
Partner locus tags
DW833_RS10200DW833_RS10205
Partner old locus tags
DW833_10185DW833_10190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118381332.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B4H3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B4H3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS10200Primary locus identifier stored in the genes table.
Old locus tagDW833_10185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000011.1Sequence record reported by the local genomic context database.
Genomic interval81 622-82 305 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 622-83 198 ntGCF_003468475::NZ_QSID01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000011.1All displayed genes belong to this local TCS context.
Neighborhood span81 622-83 198 nt1 577 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 622 nt83 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS10200GCF_003468475#DW833_RS10200
RROmpRCurrent focus
81 622-82 305 nt · Forward (+)
DW833_RS10205GCF_003468475#DW833_RS10205
HKClassic
82 302-83 198 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS10200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366890
Simplified PFAM architecture for RROC_1366890
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1366890
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key