1 SBP_bac_3#1
2-124 aa · 123 aa · 15.1% of protein
Raw token
SBP_bac_3:2:0.00000016:124:130:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS09900
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeHybridLength816 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS09900Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length816 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage631 / 816 aa (77.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa816 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
146-347 aa · 202 aa · 24.8% of protein
Raw token
SBP_bac_3:146:0.000000000000219:347:217:2243 HisKA#3
435-503 aa · 69 aa · 8.5% of protein
Raw token
HisKA:435:5.46e-18:503:69:644 HATPase_c#4
549-667 aa · 119 aa · 14.6% of protein
Raw token
HATPase_c:549:2.94e-30:667:119:1095 Response_reg#5
693-810 aa · 118 aa · 14.5% of protein
Raw token
Response_reg:693:1.61e-25:810:118:111- Raw architecture: SBP_bac_3:2:0.00000016:124:130:224#SBP_bac_3:146:0.000000000000219:347:217:224#HisKA:435:5.46e-18:503:69:64#HATPase_c:549:2.94e-30:667:119:109#Response_reg:693:1.61e-25:810:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000011.1::G00006
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span23286-28750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_09885RefSeq proteinWP_243031646.1
Context group ID
GCF_003468475::NZ_QSID01000011.1::G00006Context members
DW833_RS09895DW833_RS09900
Partner locus tags
DW833_RS09895DW833_RS09900
Partner old locus tags
DW833_09880DW833_09885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243031646.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS09900Primary locus identifier stored in the genes table.
Old locus tagDW833_09885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000011.1Sequence record reported by the local genomic context database.
Genomic interval26 300-28 750 nt2 451 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 286-28 750 ntGCF_003468475::NZ_QSID01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000011.1All displayed genes belong to this local TCS context.
Neighborhood span23 286-28 750 nt5 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 286 nt28 750 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS09895GCF_003468475#DW833_RS09895
HKHybrid
23 286-26 237 nt · Forward (+)
DW833_RS09900GCF_003468475#DW833_RS09900
HKHybridCurrent focus
26 300-28 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS09900The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0533940
Simplified PFAM architecture for HKOC_0533940
PFAM domain coverage: 302 / 816 aa (37.0%)
1 aa816 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[435-503] | HATPase_c[550-665] | Response_reg[693-809]
- Domain count: 3
- Matched identifier: HKOC_0533940
- Positioned domains: HisKA 435-503 ; HATPase_c 550-665 ; Response_reg 693-809
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS09900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key