1 HisKA#1
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:1.49e-19:536:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS09895
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeHybridLength983 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS09895Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length983 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 983 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa983 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
584-700 aa · 117 aa · 11.9% of protein
Raw token
HATPase_c:584:6.77e-32:700:117:1093 Response_reg#3
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:3.41e-18:833:114:1114 Response_reg#4
861-977 aa · 117 aa · 11.9% of protein
Raw token
Response_reg:861:8.39e-32:977:117:111- Raw architecture: HisKA:470:1.49e-19:536:67:64#HATPase_c:584:6.77e-32:700:117:109#Response_reg:720:3.41e-18:833:114:111#Response_reg:861:8.39e-32:977:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000011.1::G00006
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span23286-28750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_09880RefSeq proteinWP_118381310.1
Context group ID
GCF_003468475::NZ_QSID01000011.1::G00006Context members
DW833_RS09895DW833_RS09900
Partner locus tags
DW833_RS09895DW833_RS09900
Partner old locus tags
DW833_09880DW833_09885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118381310.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B4E4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B4E4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS09895Primary locus identifier stored in the genes table.
Old locus tagDW833_09880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000011.1Sequence record reported by the local genomic context database.
Genomic interval23 286-26 237 nt2 952 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 286-28 750 ntGCF_003468475::NZ_QSID01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000011.1All displayed genes belong to this local TCS context.
Neighborhood span23 286-28 750 nt5 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 286 nt28 750 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS09895GCF_003468475#DW833_RS09895
HKHybridCurrent focus
23 286-26 237 nt · Forward (+)
DW833_RS09900GCF_003468475#DW833_RS09900
HKHybrid
26 300-28 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS09895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0304069
Simplified PFAM architecture for HKOC_0304069
PFAM domain coverage: 414 / 983 aa (42.1%)
1 aa983 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0304069
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS09895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key