1 HisKA#1
224-290 aa · 67 aa · 11.1% of protein
Raw token
HisKA:224:2.92e-17:290:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS09355
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003468475
ClassHKTypeHybridLength606 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468475#DW833_RS09355Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 606 aa (49.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
338-454 aa · 117 aa · 19.3% of protein
Raw token
HATPase_c:338:3.13e-28:454:117:1093 Response_reg#3
477-594 aa · 118 aa · 19.5% of protein
Raw token
Response_reg:477:7.99e-30:594:118:111- Raw architecture: HisKA:224:2.92e-17:290:67:64#HATPase_c:338:3.13e-28:454:117:109#Response_reg:477:7.99e-30:594:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468475::NZ_QSID01000010.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49597-51417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_09345RefSeq proteinWP_117983249.1
Context group ID
GCF_003468475::NZ_QSID01000010.1::G00004Context members
DW833_RS09355
Partner locus tags
DW833_RS09355
Partner old locus tags
DW833_09345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117983249.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NDK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NDK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS09355Primary locus identifier stored in the genes table.
Old locus tagDW833_09345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000010.1Sequence record reported by the local genomic context database.
Genomic interval49 597-51 417 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 597-51 417 ntGCF_003468475::NZ_QSID01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000010.1All displayed genes belong to this local TCS context.
Neighborhood span49 597-51 417 nt1 821 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 597 nt51 417 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW833_RS09355GCF_003468475#DW833_RS09355
HKHybridCurrent focus
49 597-51 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS12100Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1024494
Simplified PFAM architecture for HKOC_1024494
PFAM domain coverage: 299 / 606 aa (49.3%)
1 aa606 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[224-290] | HATPase_c[340-454] | Response_reg[477-593]
- Domain count: 3
- Matched identifier: HKOC_1024494
- Positioned domains: HisKA 224-290 ; HATPase_c 340-454 ; Response_reg 477-593
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS12100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key