1 Response_reg#1
4-113 aa · 110 aa · 44.9% of protein
Raw token
Response_reg:4:2.23e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS08390
Response regulator OmpR family
Anaerobutyricum hallii · GCF_003468475
ClassRRTypeOmpRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468475#DW833_RS08390Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 245 aa (73.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-227 aa · 71 aa · 29.0% of protein
Raw token
Trans_reg_C:157:1.15e-27:227:71:77- Raw architecture: Response_reg:4:2.23e-33:113:111:111#Trans_reg_C:157:1.15e-27:227:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468475::NZ_QSID01000009.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2910-3647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_08380RefSeq proteinWP_118381127.1
Context group ID
GCF_003468475::NZ_QSID01000009.1::G00042Context members
DW833_RS08390
Partner locus tags
DW833_RS08390
Partner old locus tags
DW833_08380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118381127.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B4W5Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B4W5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS08390Primary locus identifier stored in the genes table.
Old locus tagDW833_08380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000009.1Sequence record reported by the local genomic context database.
Genomic interval2 910-3 647 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 910-3 647 ntGCF_003468475::NZ_QSID01000009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000009.1All displayed genes belong to this local TCS context.
Neighborhood span2 910-3 647 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 910 nt3 647 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW833_RS08390GCF_003468475#DW833_RS08390
RROmpRCurrent focus
2 910-3 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS08390The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0793522
Simplified PFAM architecture for RROC_0793522
PFAM domain coverage: 182 / 245 aa (74.3%)
1 aa245 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-227]
- Domain count: 2
- Matched identifier: RROC_0793522
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-227 ; Trans_reg_C 156-227
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS08390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key