1 Response_reg#1
4-112 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:4:1.44e-36:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW833_RS01980
Response regulator OmpR family
Anaerobutyricum hallii · GCF_003468475
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468475#DW833_RS01980Stable P2CS identifier used across views.
GenomeGCF_003468475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:145:8.76e-32:220:77:77- Raw architecture: Response_reg:4:1.44e-36:112:110:111#Trans_reg_C:145:8.76e-32:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468475::NZ_QSID01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116312-118350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW833_01975RefSeq proteinWP_021906361.1
Context group ID
GCF_003468475::NZ_QSID01000002.1::G00023Context members
DW833_RS01980DW833_RS01985
Partner locus tags
DW833_RS01980DW833_RS01985
Partner old locus tags
DW833_01975DW833_01980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021906361.1Primary protein accession used for annex mappings.
UniProt accessionA0A414B8M4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414B8M4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW833_RS01980Primary locus identifier stored in the genes table.
Old locus tagDW833_01975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSID01000002.1Sequence record reported by the local genomic context database.
Genomic interval116 312-116 980 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 312-118 350 ntGCF_003468475::NZ_QSID01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468475::NZ_QSID01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSID01000002.1All displayed genes belong to this local TCS context.
Neighborhood span116 312-118 350 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 312 nt118 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW833_RS01980GCF_003468475#DW833_RS01980
RROmpRCurrent focus
116 312-116 980 nt · Forward (+)
DW833_RS01985GCF_003468475#DW833_RS01985
HKClassic
116 983-118 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468475#DW833_RS01980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1646888
Simplified PFAM architecture for RROC_1646888
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1646888
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_003468475#DW833_RS01980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003468475
AssemblyASM346847v1 · Scaffoldhaploid
Genome composition3 404 640 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 74 · HK 39 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key