1 Response_reg#1
4-113 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:4:1.5e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS15455
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS15455Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:150:1.37e-33:226:77:77- Raw architecture: Response_reg:4:1.5e-39:113:111:111#Trans_reg_C:150:1.37e-33:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000024.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17343-20565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_15465RefSeq proteinWP_022045676.1
Context group ID
GCF_003462365::NZ_QTYW01000024.1::G00026Context members
DXD06_RS15450DXD06_RS15455
Partner locus tags
DXD06_RS15450DXD06_RS15455
Partner old locus tags
DXD06_15460DXD06_15465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022045676.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KIK1Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KIK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS15455Primary locus identifier stored in the genes table.
Old locus tagDXD06_15465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000024.1Sequence record reported by the local genomic context database.
Genomic interval19 867-20 565 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 343-20 565 ntGCF_003462365::NZ_QTYW01000024.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000024.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000024.1All displayed genes belong to this local TCS context.
Neighborhood span17 343-20 565 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 343 nt20 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS15450GCF_003462365#DXD06_RS15450
HKClassic
17 343-19 874 nt · Reverse (-)
DXD06_RS15455GCF_003462365#DXD06_RS15455
RROmpRCurrent focus
19 867-20 565 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS15455The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129411
Simplified PFAM architecture for RROC_1129411
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1129411
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS15455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key