1 HisKA#1
236-302 aa · 67 aa · 14.6% of protein
Raw token
HisKA:236:0.0000000000000173:302:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS03365
Histidine kinase, Classic
Roseburia sp. TF10-5 · GCF_003462365
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS03365Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 460 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
348-443 aa · 96 aa · 20.9% of protein
Raw token
HATPase_c:348:0.0000000000000316:443:100:109- Raw architecture: HisKA:236:0.0000000000000173:302:67:64#HATPase_c:348:0.0000000000000316:443:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span268643-270721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_03370RefSeq proteinWP_117830639.1
Context group ID
GCF_003462365::NZ_QTYW01000002.1::G00016Context members
DXD06_RS03365DXD06_RS03370
Partner locus tags
DXD06_RS03365DXD06_RS03370
Partner old locus tags
DXD06_03370DXD06_03375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830639.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS03365Primary locus identifier stored in the genes table.
Old locus tagDXD06_03370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000002.1Sequence record reported by the local genomic context database.
Genomic interval268 643-270 025 nt1 383 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span268 643-270 721 ntGCF_003462365::NZ_QTYW01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span268 643-270 721 nt2 079 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
268 643 nt270 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS03365GCF_003462365#DXD06_RS03365
HKClassicCurrent focus
268 643-270 025 nt · Reverse (-)
DXD06_RS03370GCF_003462365#DXD06_RS03370
RROmpR
270 032-270 721 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS03365The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1836582
Simplified PFAM architecture for HKOC_1836582
PFAM domain coverage: 161 / 460 aa (35.0%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-302] | HATPase_c[349-443]
- Domain count: 2
- Matched identifier: HKOC_1836582
- Positioned domains: HisKA 237-302 ; HATPase_c 349-443
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS03365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key