1 Hpt#1
5-97 aa · 93 aa · 13.3% of protein
Raw token
Hpt:5:1.68e-17:97:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS00375
Histidine kinase, CheA
Roseburia sp. TF10-5 · GCF_003462365
ClassHKTypeCheALength698 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS00375Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length698 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage425 / 698 aa (60.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa698 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
316-379 aa · 64 aa · 9.2% of protein
Raw token
H-kinase_dim:316:6.74e-16:379:67:673 HATPase_c#3
427-566 aa · 140 aa · 20.1% of protein
Raw token
HATPase_c:427:0.00000000000000104:566:140:1094 CheW#4
571-698 aa · 128 aa · 18.3% of protein
Raw token
CheW:571:2.84e-30:698:135:138- Raw architecture: Hpt:5:1.68e-17:97:93:84#H-kinase_dim:316:6.74e-16:379:67:67#HATPase_c:427:0.00000000000000104:566:140:109#CheW:571:2.84e-30:698:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71476-74638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_00375RefSeq proteinWP_117830256.1
Context group ID
GCF_003462365::NZ_QTYW01000001.1::G00001Context members
DXD06_RS00370DXD06_RS00375
Partner locus tags
DXD06_RS00370DXD06_RS00375
Partner old locus tags
DXD06_00370DXD06_00375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830256.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS00375Primary locus identifier stored in the genes table.
Old locus tagDXD06_00375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000001.1Sequence record reported by the local genomic context database.
Genomic interval72 542-74 638 nt2 097 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 476-74 638 ntGCF_003462365::NZ_QTYW01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 476-74 638 nt3 163 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 476 nt74 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS00370GCF_003462365#DXD06_RS00370
RRCheB
71 476-72 540 nt · Forward (+)
DXD06_RS00375GCF_003462365#DXD06_RS00375
HKCheACurrent focus
72 542-74 638 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS00375The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0773614
Simplified PFAM architecture for HKOC_0773614
PFAM domain coverage: 500 / 698 aa (71.6%)
1 aa698 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[182-257] | H-kinase_dim[315-379] | HATPase_c[428-566] | CheW[571-697]
- Domain count: 5
- Matched identifier: HKOC_0773614
- Positioned domains: Hpt 5-97 ; P2 182-257 ; H-kinase_dim 315-379 ; HATPase_c 428-566 ; CheW 571-697
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS00375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key