1 HAMP#1
158-226 aa · 69 aa · 14.9% of protein
Raw token
HAMP:158:0.0000141:226:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS02855
Histidine kinase, Classic
Roseburia sp. TF10-5 · GCF_003462365
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS02855Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 462 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-296 aa · 60 aa · 13.0% of protein
Raw token
HisKA:237:0.000000000000141:296:60:643 HATPase_c#3
353-461 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:353:0.00000000000114:461:109:109- Raw architecture: HAMP:158:0.0000141:226:70:69#HisKA:237:0.000000000000141:296:60:64#HATPase_c:353:0.00000000000114:461:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168696-170734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_02860RefSeq proteinWP_117830576.1
Context group ID
GCF_003462365::NZ_QTYW01000002.1::G00015Context members
DXD06_RS02855DXD06_RS02860
Partner locus tags
DXD06_RS02855DXD06_RS02860
Partner old locus tags
DXD06_02860DXD06_02865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS02855Primary locus identifier stored in the genes table.
Old locus tagDXD06_02860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000002.1Sequence record reported by the local genomic context database.
Genomic interval168 696-170 084 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 696-170 734 ntGCF_003462365::NZ_QTYW01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span168 696-170 734 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 696 nt170 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS02855GCF_003462365#DXD06_RS02855
HKClassicCurrent focus
168 696-170 084 nt · Reverse (-)
DXD06_RS02860GCF_003462365#DXD06_RS02860
RROmpR
170 075-170 734 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS02855The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1810585
Simplified PFAM architecture for HKOC_1810585
PFAM domain coverage: 169 / 462 aa (36.6%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-296] | HATPase_c[351-459]
- Domain count: 2
- Matched identifier: HKOC_1810585
- Positioned domains: HisKA 237-296 ; HATPase_c 351-459
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS02855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key