1 HAMP#1
186-252 aa · 67 aa · 13.4% of protein
Raw token
HAMP:186:3.04e-16:252:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS14715
Histidine kinase, Classic
Roseburia sp. TF10-5 · GCF_003462365
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS14715Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 501 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.6% of protein
Raw token
HisKA:263:0.00000000000000546:330:68:643 HATPase_c#3
377-490 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:377:2.17e-33:490:114:109- Raw architecture: HAMP:186:3.04e-16:252:67:69#HisKA:263:0.00000000000000546:330:68:64#HATPase_c:377:2.17e-33:490:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000021.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26174-28346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_14725RefSeq proteinWP_117832789.1
Context group ID
GCF_003462365::NZ_QTYW01000021.1::G00021Context members
DXD06_RS14715DXD06_RS14720
Partner locus tags
DXD06_RS14715DXD06_RS14720
Partner old locus tags
DXD06_14725DXD06_14730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117832789.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS14715Primary locus identifier stored in the genes table.
Old locus tagDXD06_14725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000021.1Sequence record reported by the local genomic context database.
Genomic interval26 174-27 679 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 174-28 346 ntGCF_003462365::NZ_QTYW01000021.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000021.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000021.1All displayed genes belong to this local TCS context.
Neighborhood span26 174-28 346 nt2 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 174 nt28 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS14715GCF_003462365#DXD06_RS14715
HKClassicCurrent focus
26 174-27 679 nt · Forward (+)
DXD06_RS14720GCF_003462365#DXD06_RS14720
RROmpR
27 657-28 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS14715The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1469972
Simplified PFAM architecture for HKOC_1469972
PFAM domain coverage: 230 / 501 aa (45.9%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[264-329] | HATPase_c[378-488]
- Domain count: 3
- Matched identifier: HKOC_1469972
- Positioned domains: HAMP 200-252 ; HisKA 264-329 ; HATPase_c 378-488
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS14715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key