1 Response_reg#1
13-106 aa · 94 aa · 82.5% of protein
Raw token
Response_reg:13:3.42e-23:106:94:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD18_RS04165
Response regulator, CheY family
Dorea formicigenerans · GCF_003437485
ClassRRTypeCheYLength114 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437485#DXD18_RS04165Stable P2CS identifier used across views.
GenomeGCF_003437485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length114 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage94 / 114 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa114 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:13:3.42e-23:106:94:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437485::NZ_QSQM01000002.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23977-24321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD18_04155RefSeq proteinWP_117657210.1
Context group ID
GCF_003437485::NZ_QSQM01000002.1::G00026Context members
DXD18_RS04165
Partner locus tags
DXD18_RS04165
Partner old locus tags
DXD18_04155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117657210.1Primary protein accession used for annex mappings.
UniProt accessionA0A415MZ43Primary UniProt accession resolved in the annex database.
UniProt IDA0A415MZ43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD18_RS04165Primary locus identifier stored in the genes table.
Old locus tagDXD18_04155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQM01000002.1Sequence record reported by the local genomic context database.
Genomic interval23 977-24 321 nt345 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 977-24 321 ntGCF_003437485::NZ_QSQM01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437485::NZ_QSQM01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span23 977-24 321 nt345 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 977 nt24 321 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD18_RS04165GCF_003437485#DXD18_RS04165
RRCheYCurrent focus
23 977-24 321 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS04165The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2466566
Simplified PFAM architecture for RROC_2466566
PFAM domain coverage: 96 / 114 aa (84.2%)
1 aa114 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[11-106]
- Domain count: 1
- Matched identifier: RROC_2466566
- Positioned domains: Response_reg 11-106 ; Response_reg 11-106
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS04165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003437485
AssemblyASM343748v1 · Scaffoldhaploid
Genome composition2 865 423 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 84 · HK 41 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key