1 Response_reg#1
5-113 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:5:1.17e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD18_RS02305
Response regulator OmpR family
Dorea formicigenerans · GCF_003437485
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437485#DXD18_RS02305Stable P2CS identifier used across views.
GenomeGCF_003437485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:6.83e-28:222:77:77- Raw architecture: Response_reg:5:1.17e-34:113:111:111#Trans_reg_C:147:6.83e-28:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437485::NZ_QSQM01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span479686-481484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD18_02300RefSeq proteinWP_117657012.1
Context group ID
GCF_003437485::NZ_QSQM01000001.1::G00006Context members
DXD18_RS02300DXD18_RS02305
Partner locus tags
DXD18_RS02300DXD18_RS02305
Partner old locus tags
DXD18_02295DXD18_02300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117657012.1Primary protein accession used for annex mappings.
UniProt accessionA0A415H9M8Primary UniProt accession resolved in the annex database.
UniProt IDA0A415H9M8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD18_RS02305Primary locus identifier stored in the genes table.
Old locus tagDXD18_02300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQM01000001.1Sequence record reported by the local genomic context database.
Genomic interval480 810-481 484 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 686-481 484 ntGCF_003437485::NZ_QSQM01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437485::NZ_QSQM01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span479 686-481 484 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 686 nt481 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD18_RS02300GCF_003437485#DXD18_RS02300
HKClassic
479 686-480 822 nt · Reverse (-)
DXD18_RS02305GCF_003437485#DXD18_RS02305
RROmpRCurrent focus
480 810-481 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS02305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543303
Simplified PFAM architecture for RROC_1543303
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1543303
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS02305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003437485
AssemblyASM343748v1 · Scaffoldhaploid
Genome composition2 865 423 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 84 · HK 41 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key