1 Response_reg#1
8-115 aa · 108 aa · 20.3% of protein
Raw token
Response_reg:8:2.92e-24:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD18_RS01395
Response regulator, unclassified
Dorea formicigenerans · GCF_003437485
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437485#DXD18_RS01395Stable P2CS identifier used across views.
GenomeGCF_003437485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 532 aa (34.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.00000138:477:42:423 HTH_AraC#3
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.0000000556:526:32:42- Raw architecture: Response_reg:8:2.92e-24:115:111:111#HTH_AraC:436:0.00000138:477:42:42#HTH_AraC:495:0.0000000556:526:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437485::NZ_QSQM01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span302403-305776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD18_01390RefSeq proteinWP_117656942.1
Context group ID
GCF_003437485::NZ_QSQM01000001.1::G00004Context members
DXD18_RS01395DXD18_RS01400
Partner locus tags
DXD18_RS01395DXD18_RS01400
Partner old locus tags
DXD18_01390DXD18_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117656942.1Primary protein accession used for annex mappings.
UniProt accessionA0A415HAK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A415HAK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD18_RS01395Primary locus identifier stored in the genes table.
Old locus tagDXD18_01390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQM01000001.1Sequence record reported by the local genomic context database.
Genomic interval302 403-304 001 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span302 403-305 776 ntGCF_003437485::NZ_QSQM01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437485::NZ_QSQM01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span302 403-305 776 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
302 403 nt305 776 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD18_RS01395GCF_003437485#DXD18_RS01395
RRunclassifiedCurrent focus
302 403-304 001 nt · Forward (+)
DXD18_RS01400GCF_003437485#DXD18_RS01400
HKClassic
303 998-305 776 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS01395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108247
Simplified PFAM architecture for RROC_0108247
PFAM domain coverage: 189 / 532 aa (35.5%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-117] | HTH_18[451-528]
- Domain count: 2
- Matched identifier: RROC_0108247
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS01395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003437485
AssemblyASM343748v1 · Scaffoldhaploid
Genome composition2 865 423 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 84 · HK 41 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key