1 Response_reg#1
6-121 aa · 116 aa · 44.1% of protein
Raw token
Response_reg:6:5.42e-20:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS01530
Response regulator Spo0A family
Dorea formicigenerans · GCF_003436235
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436235#DXD84_RS01530Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 263 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Spo0A_C#2
153-256 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:153:5.29e-65:256:104:104- Raw architecture: Response_reg:6:5.42e-20:121:116:111#Spo0A_C:153:5.29e-65:256:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436235::NZ_QSOI01000002.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42915-43706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_01530RefSeq proteinWP_117494204.1
Context group ID
GCF_003436235::NZ_QSOI01000002.1::G00017Context members
DXD84_RS01530
Partner locus tags
DXD84_RS01530
Partner old locus tags
DXD84_01530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494204.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F9K1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F9K1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS01530Primary locus identifier stored in the genes table.
Old locus tagDXD84_01530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000002.1Sequence record reported by the local genomic context database.
Genomic interval42 915-43 706 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 915-43 706 ntGCF_003436235::NZ_QSOI01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 915-43 706 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 915 nt43 706 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD84_RS01530GCF_003436235#DXD84_RS01530
RRSpo0ACurrent focus
42 915-43 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS01530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0640616
Simplified PFAM architecture for RROC_0640616
PFAM domain coverage: 219 / 263 aa (83.3%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[153-256]
- Domain count: 2
- Matched identifier: RROC_0640616
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 153-256 ; Spo0A_C 153-256
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS01530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key