1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:3.88e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS00510
Response regulator OmpR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436235#DXD84_RS00510Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:154:6.78e-30:229:77:77- Raw architecture: Response_reg:6:3.88e-36:116:111:111#Trans_reg_C:154:6.78e-30:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436235::NZ_QSOI01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span111430-112125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_00510RefSeq proteinWP_117494037.1
Context group ID
GCF_003436235::NZ_QSOI01000001.1::G00004Context members
DXD84_RS00510
Partner locus tags
DXD84_RS00510
Partner old locus tags
DXD84_00510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494037.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4FAM9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4FAM9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS00510Primary locus identifier stored in the genes table.
Old locus tagDXD84_00510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000001.1Sequence record reported by the local genomic context database.
Genomic interval111 430-112 125 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 430-112 125 ntGCF_003436235::NZ_QSOI01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span111 430-112 125 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 430 nt112 125 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD84_RS00510GCF_003436235#DXD84_RS00510
RROmpRCurrent focus
111 430-112 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS00510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168151
Simplified PFAM architecture for RROC_1168151
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-116] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1168151
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS00510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key