1 His_kinase#1
372-450 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:372:5.19e-36:450:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS00575
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS00575Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 570 aa (30.7%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
468-563 aa · 96 aa · 16.8% of protein
Raw token
HATPase_c:468:0.00000000000486:563:104:109- Raw architecture: His_kinase:372:5.19e-36:450:80:80#HATPase_c:468:0.00000000000486:563:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126822-129277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_00575RefSeq proteinWP_117494049.1
Context group ID
GCF_003436235::NZ_QSOI01000001.1::G00005Context members
DXD84_RS00570DXD84_RS00575
Partner locus tags
DXD84_RS00570DXD84_RS00575
Partner old locus tags
DXD84_00570DXD84_00575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494049.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4FAS1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4FAS1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS00575Primary locus identifier stored in the genes table.
Old locus tagDXD84_00575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000001.1Sequence record reported by the local genomic context database.
Genomic interval127 565-129 277 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 822-129 277 ntGCF_003436235::NZ_QSOI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span126 822-129 277 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 822 nt129 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS00570GCF_003436235#DXD84_RS00570
RRLytTR
126 822-127 568 nt · Reverse (-)
DXD84_RS00575GCF_003436235#DXD84_RS00575
HKClassicCurrent focus
127 565-129 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS00575The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1212909
Simplified PFAM architecture for HKOC_1212909
PFAM domain coverage: 338 / 570 aa (59.3%)
1 aa570 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[29-190] | His_kinase[372-450] | HATPase_c[467-563]
- Domain count: 3
- Matched identifier: HKOC_1212909
- Positioned domains: 5TM-5TMR_LYT 29-190 ; His_kinase 372-450 ; HATPase_c 467-563
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS00575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key