1 Response_reg#1
3-113 aa · 111 aa · 44.8% of protein
Raw token
Response_reg:3:1.74e-24:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS00570
Response regulator LytTR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS00570Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 248 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
147-246 aa · 100 aa · 40.3% of protein
Raw token
LytTR:147:3.76e-25:246:101:98- Raw architecture: Response_reg:3:1.74e-24:113:115:111#LytTR:147:3.76e-25:246:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126822-129277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_00570RefSeq proteinWP_117494048.1
Context group ID
GCF_003436235::NZ_QSOI01000001.1::G00005Context members
DXD84_RS00570DXD84_RS00575
Partner locus tags
DXD84_RS00570DXD84_RS00575
Partner old locus tags
DXD84_00570DXD84_00575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494048.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4FAP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4FAP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS00570Primary locus identifier stored in the genes table.
Old locus tagDXD84_00570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000001.1Sequence record reported by the local genomic context database.
Genomic interval126 822-127 568 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 822-129 277 ntGCF_003436235::NZ_QSOI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span126 822-129 277 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 822 nt129 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS00570GCF_003436235#DXD84_RS00570
RRLytTRCurrent focus
126 822-127 568 nt · Reverse (-)
DXD84_RS00575GCF_003436235#DXD84_RS00575
HKClassic
127 565-129 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS00570The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746235
Simplified PFAM architecture for RROC_0746235
PFAM domain coverage: 208 / 248 aa (83.9%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[148-245]
- Domain count: 2
- Matched identifier: RROC_0746235
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 148-245 ; LytTR 148-245
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS00570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key