1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:8.78e-17:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS15720
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436075#DXD81_RS15720Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 721 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
458-576 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:458:8.96e-28:576:119:1093 Response_reg#3
599-715 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:599:2.8e-28:715:117:111- Raw architecture: HisKA:345:8.78e-17:411:67:64#HATPase_c:458:8.96e-28:576:119:109#Response_reg:599:2.8e-28:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436075::NZ_QSOL01000017.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68652-70817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_15730RefSeq proteinWP_117639940.1
Context group ID
GCF_003436075::NZ_QSOL01000017.1::G00029Context members
DXD81_RS15720
Partner locus tags
DXD81_RS15720
Partner old locus tags
DXD81_15730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117639940.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS15720Primary locus identifier stored in the genes table.
Old locus tagDXD81_15730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000017.1Sequence record reported by the local genomic context database.
Genomic interval68 652-70 817 nt2 166 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 652-70 817 ntGCF_003436075::NZ_QSOL01000017.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000017.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000017.1All displayed genes belong to this local TCS context.
Neighborhood span68 652-70 817 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 652 nt70 817 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD81_RS15720GCF_003436075#DXD81_RS15720
HKHybridCurrent focus
68 652-70 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS15720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730869
Simplified PFAM architecture for HKOC_0730869
PFAM domain coverage: 300 / 721 aa (41.6%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[460-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0730869
- Positioned domains: HisKA 345-411 ; HATPase_c 460-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS15720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key