1 SBP_bac_3#1
45-260 aa · 216 aa · 23.1% of protein
Raw token
SBP_bac_3:45:9.76e-31:260:226:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00030
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength936 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS00030Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length936 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage717 / 936 aa (76.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa936 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.9% of protein
Raw token
SBP_bac_3:282:0.0000000000000113:486:221:2243 HisKA#3
571-639 aa · 69 aa · 7.4% of protein
Raw token
HisKA:571:2.33e-20:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.7% of protein
Raw token
HATPase_c:685:7.7e-28:803:119:1095 Response_reg#5
829-936 aa · 108 aa · 11.5% of protein
Raw token
Response_reg:829:1.08e-26:936:108:111- Raw architecture: SBP_bac_3:45:9.76e-31:260:226:224#SBP_bac_3:282:0.0000000000000113:486:221:224#HisKA:571:2.33e-20:639:69:64#HATPase_c:685:7.7e-28:803:119:109#Response_reg:829:1.08e-26:936:108:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000001.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span8117-13702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00030RefSeq proteinWP_117638287.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00002Context members
DXD81_RS00030DXD81_RS00035
Partner locus tags
DXD81_RS00030DXD81_RS00035
Partner old locus tags
DXD81_00030DXD81_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117638287.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00030Primary locus identifier stored in the genes table.
Old locus tagDXD81_00030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval8 117-10 927 nt2 811 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 117-13 702 ntGCF_003436075::NZ_QSOL01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span8 117-13 702 nt5 586 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 117 nt13 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS00030GCF_003436075#DXD81_RS00030
HKHybridCurrent focus
8 117-10 927 nt · Forward (+)
DXD81_RS00035GCF_003436075#DXD81_RS00035
HKHybrid
11 228-13 702 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS00030The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0344642
Simplified PFAM architecture for HKOC_0344642
PFAM domain coverage: 502 / 936 aa (53.6%)
1 aa936 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[53-261] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-936]
- Domain count: 4
- Matched identifier: HKOC_0344642
- Positioned domains: SBP_bac_3 53-261 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-936
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS00030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key