1 PAS_3#1
40-120 aa · 81 aa · 9.8% of protein
Raw token
PAS_3:40:0.00000000000000117:120:81:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00035
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength824 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS00035Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length824 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage468 / 824 aa (56.8%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa824 aa
Domain-by-domain annotation5 items
2 PAS_3#2
169-258 aa · 90 aa · 10.9% of protein
Raw token
PAS_3:169:0.0000000000374:258:93:893 HisKA#3
427-492 aa · 66 aa · 8.0% of protein
Raw token
HisKA:427:3.36e-18:492:66:644 HATPase_c#4
539-652 aa · 114 aa · 13.8% of protein
Raw token
HATPase_c:539:5.72e-29:652:114:1095 Response_reg#5
683-799 aa · 117 aa · 14.2% of protein
Raw token
Response_reg:683:1.63e-29:799:117:111- Raw architecture: PAS_3:40:0.00000000000000117:120:81:89#PAS_3:169:0.0000000000374:258:93:89#HisKA:427:3.36e-18:492:66:64#HATPase_c:539:5.72e-29:652:114:109#Response_reg:683:1.63e-29:799:117:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000001.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span8117-13702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00035RefSeq proteinWP_055056220.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00002Context members
DXD81_RS00030DXD81_RS00035
Partner locus tags
DXD81_RS00030DXD81_RS00035
Partner old locus tags
DXD81_00030DXD81_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056220.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PRK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PRK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00035Primary locus identifier stored in the genes table.
Old locus tagDXD81_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval11 228-13 702 nt2 475 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 117-13 702 ntGCF_003436075::NZ_QSOL01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span8 117-13 702 nt5 586 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 117 nt13 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS00030GCF_003436075#DXD81_RS00030
HKHybrid
8 117-10 927 nt · Forward (+)
DXD81_RS00035GCF_003436075#DXD81_RS00035
HKHybridCurrent focus
11 228-13 702 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS09930Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0525744
Simplified PFAM architecture for HKOC_0525744
PFAM domain coverage: 466 / 824 aa (56.6%)
1 aa824 aa
PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[40-122] | PAS_3[170-256] | HisKA[427-492] | HATPase_c[539-652] | Response_reg[683-798]
- Domain count: 5
- Matched identifier: HKOC_0525744
- Positioned domains: PAS_3 40-122 ; PAS_3 170-256 ; HisKA 427-492 ; HATPase_c 539-652 ; Response_reg 683-798
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS09930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key