1 HisKA#1
325-391 aa · 67 aa · 9.3% of protein
Raw token
HisKA:325:1.25e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00010
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength720 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003436075#DXD81_RS00010Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length720 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 720 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa720 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:438:4.78e-29:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.3% of protein
Raw token
Response_reg:584:5.49e-27:700:117:111- Raw architecture: HisKA:325:1.25e-17:391:67:64#HATPase_c:438:4.78e-29:556:119:109#Response_reg:584:5.49e-27:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003436075::NZ_QSOL01000001.1::G00001
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span327-7141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00010RefSeq proteinWP_117638285.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00001Context members
DXD81_RS00010DXD81_RS00015DXD81_RS00020
Partner locus tags
DXD81_RS00010DXD81_RS00015DXD81_RS00020
Partner old locus tags
DXD81_00010DXD81_00015DXD81_00020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638285.1Primary protein accession used for annex mappings.
UniProt accessionA0A414W3A1Primary UniProt accession resolved in the annex database.
UniProt IDA0A414W3A1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00010Primary locus identifier stored in the genes table.
Old locus tagDXD81_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval327-2 489 nt2 163 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span327-7 141 ntGCF_003436075::NZ_QSOL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span327-7 141 nt6 815 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
327 nt7 141 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD81_RS00010GCF_003436075#DXD81_RS00010
HKHybridCurrent focus
327-2 489 nt · Forward (+)
DXD81_RS00015GCF_003436075#DXD81_RS00015
HKHybrid
2 753-5 581 nt · Forward (+)
DXD81_RS00020GCF_003436075#DXD81_RS00020
RRRpfG
5 633-7 141 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964238905#ACES0K_RS15700Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0677132
Simplified PFAM architecture for HKOC_0677132
PFAM domain coverage: 301 / 747 aa (40.3%)
1 aa747 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[352-418] | HATPase_c[465-582] | Response_reg[611-726]
- Domain count: 3
- Matched identifier: HKOC_0677132
- Positioned domains: HisKA 352-418 ; HATPase_c 465-582 ; Response_reg 611-726
Cluster members and taxonomy
Representative gene: GCF_964238905#ACES0K_RS15700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key