1 Response_reg#1
5-109 aa · 105 aa · 29.6% of protein
Raw token
Response_reg:5:5.95e-23:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS02495
Response regulator RpfG family
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeRpfGLength355 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435265#DWY69_RS02495Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage239 / 355 aa (67.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HD#2
172-305 aa · 134 aa · 37.7% of protein
Raw token
HD:172:0.000000000000124:305:134:110- Raw architecture: Response_reg:5:5.95e-23:109:106:111#HD:172:0.000000000000124:305:134:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435265::NZ_QVLU01000002.1::G00062
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span156801-157868Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_02495RefSeq proteinWP_025489757.1
Context group ID
GCF_003435265::NZ_QVLU01000002.1::G00062Context members
DWY69_RS02495
Partner locus tags
DWY69_RS02495
Partner old locus tags
DWY69_02495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489757.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3J3Q3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3J3Q3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS02495Primary locus identifier stored in the genes table.
Old locus tagDWY69_02495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000002.1Sequence record reported by the local genomic context database.
Genomic interval156 801-157 868 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span156 801-157 868 ntGCF_003435265::NZ_QVLU01000002.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000002.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span156 801-157 868 nt1 068 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 801 nt157 868 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY69_RS02495GCF_003435265#DWY69_RS02495
RRRpfGCurrent focus
156 801-157 868 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS02495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0469208
Simplified PFAM architecture for RROC_0469208
PFAM domain coverage: 245 / 355 aa (69.0%)
1 aa355 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[5-111] | HD_5[189-326]
- Domain count: 2
- Matched identifier: RROC_0469208
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; HD_5 189-326 ; HD_5 189-326
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS02495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key