1 HAMP#1
283-352 aa · 70 aa · 12.3% of protein
Raw token
HAMP:283:0.00000000000341:352:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00425
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_003435265
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003435265#DWY69_RS00425Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 570 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
368-446 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:368:3.32e-28:446:79:803 HATPase_c#3
462-562 aa · 101 aa · 17.7% of protein
Raw token
HATPase_c:462:0.000000000188:562:110:109- Raw architecture: HAMP:283:0.00000000000341:352:70:69#His_kinase:368:3.32e-28:446:79:80#HATPase_c:462:0.000000000188:562:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003435265::NZ_QVLU01000001.1::G00004
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span114809-119410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00425RefSeq proteinWP_117530391.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00004Context members
DWY69_RS00420DWY69_RS00425DWY69_RS00430DWY69_RS00435
Partner locus tags
DWY69_RS00420DWY69_RS00425DWY69_RS00430DWY69_RS00435
Partner old locus tags
DWY69_00420DWY69_00425DWY69_00430DWY69_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117530391.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3I7V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3I7V7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00425Primary locus identifier stored in the genes table.
Old locus tagDWY69_00425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval115 935-117 647 nt1 713 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 809-119 410 ntGCF_003435265::NZ_QVLU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span114 809-119 410 nt4 602 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 809 nt119 410 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DWY69_RS00420GCF_003435265#DWY69_RS00420
RRunclassified
114 809-115 918 nt · Forward (+)
DWY69_RS00425GCF_003435265#DWY69_RS00425
HKClassicCurrent focus
115 935-117 647 nt · Forward (+)
DWY69_RS00430GCF_003435265#DWY69_RS00430
RROmpR
117 780-118 472 nt · Forward (+)
DWY69_RS00435GCF_003435265#DWY69_RS00435
HKClassic
118 469-119 410 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00425The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1212905
Simplified PFAM architecture for HKOC_1212905
PFAM domain coverage: 226 / 570 aa (39.6%)
1 aa570 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-351] | His_kinase[368-445] | HATPase_c[466-562]
- Domain count: 3
- Matched identifier: HKOC_1212905
- Positioned domains: HAMP 301-351 ; His_kinase 368-445 ; HATPase_c 466-562
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key