1 Response_reg#1
4-118 aa · 115 aa · 21.3% of protein
Raw token
Response_reg:4:4.29e-28:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00180
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435265#DWY69_RS00180Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 540 aa (29.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000000207:483:42:42- Raw architecture: Response_reg:4:4.29e-28:118:115:111#HTH_AraC:442:0.00000000207:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435265::NZ_QVLU01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56040-59516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00180RefSeq proteinWP_025489331.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00001Context members
DWY69_RS00175DWY69_RS00180
Partner locus tags
DWY69_RS00175DWY69_RS00180
Partner old locus tags
DWY69_00175DWY69_00180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489331.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3J4Y2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3J4Y2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00180Primary locus identifier stored in the genes table.
Old locus tagDWY69_00180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval57 894-59 516 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 040-59 516 ntGCF_003435265::NZ_QVLU01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span56 040-59 516 nt3 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 040 nt59 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY69_RS00175GCF_003435265#DWY69_RS00175
HKClassic
56 040-57 842 nt · Forward (+)
DWY69_RS00180GCF_003435265#DWY69_RS00180
RRunclassifiedCurrent focus
57 894-59 516 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089803
Simplified PFAM architecture for RROC_0089803
PFAM domain coverage: 187 / 540 aa (34.6%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[461-533]
- Domain count: 2
- Matched identifier: RROC_0089803
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 461-533 ; HTH_18 461-533
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key