1 HisKA#1
94-154 aa · 61 aa · 19.5% of protein
Raw token
HisKA:94:4.92e-16:154:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00435
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_003435265
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003435265#DWY69_RS00435Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 313 aa (54.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-309 aa · 110 aa · 35.1% of protein
Raw token
HATPase_c:200:1.24e-23:309:110:109- Raw architecture: HisKA:94:4.92e-16:154:61:64#HATPase_c:200:1.24e-23:309:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003435265::NZ_QVLU01000001.1::G00004
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span114809-119410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00435RefSeq proteinWP_102289317.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00004Context members
DWY69_RS00420DWY69_RS00425DWY69_RS00430DWY69_RS00435
Partner locus tags
DWY69_RS00420DWY69_RS00425DWY69_RS00430DWY69_RS00435
Partner old locus tags
DWY69_00420DWY69_00425DWY69_00430DWY69_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_102289317.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3I7V2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3I7V2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00435Primary locus identifier stored in the genes table.
Old locus tagDWY69_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval118 469-119 410 nt942 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 809-119 410 ntGCF_003435265::NZ_QVLU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span114 809-119 410 nt4 602 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 809 nt119 410 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DWY69_RS00420GCF_003435265#DWY69_RS00420
RRunclassified
114 809-115 918 nt · Forward (+)
DWY69_RS00425GCF_003435265#DWY69_RS00425
HKClassic
115 935-117 647 nt · Forward (+)
DWY69_RS00430GCF_003435265#DWY69_RS00430
RROmpR
117 780-118 472 nt · Forward (+)
DWY69_RS00435GCF_003435265#DWY69_RS00435
HKClassicCurrent focus
118 469-119 410 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00435The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875196
Simplified PFAM architecture for HKOC_2875196
PFAM domain coverage: 171 / 313 aa (54.6%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-154] | HATPase_c[201-309]
- Domain count: 2
- Matched identifier: HKOC_2875196
- Positioned domains: HisKA 93-154 ; HATPase_c 201-309
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key