1 SBP_bac_3#1
73-277 aa · 205 aa · 21.7% of protein
Raw token
SBP_bac_3:73:4.6e-20:277:216:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00360
Histidine kinase, Hybrid
Eisenbergiella massiliensis · GCF_003435265
ClassHKTypeHybridLength945 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003435265#DWY69_RS00360Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length945 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage715 / 945 aa (75.7%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa945 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
301-509 aa · 209 aa · 22.1% of protein
Raw token
SBP_bac_3:301:0.000000000223:509:226:2243 HisKA#3
573-639 aa · 67 aa · 7.1% of protein
Raw token
HisKA:573:2.13e-16:639:67:644 HATPase_c#4
685-800 aa · 116 aa · 12.3% of protein
Raw token
HATPase_c:685:1.74e-30:800:116:1095 Response_reg#5
823-940 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:823:4.06e-28:940:118:111- Raw architecture: SBP_bac_3:73:4.6e-20:277:216:224#SBP_bac_3:301:0.000000000223:509:226:224#HisKA:573:2.13e-16:639:67:64#HATPase_c:685:1.74e-30:800:116:109#Response_reg:823:4.06e-28:940:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003435265::NZ_QVLU01000001.1::G00002
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span93966-98311Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00360RefSeq proteinWP_025489304.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00002Context members
DWY69_RS00350DWY69_RS00355DWY69_RS00360
Partner locus tags
DWY69_RS00350DWY69_RS00355DWY69_RS00360
Partner old locus tags
DWY69_00350DWY69_00355DWY69_00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489304.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3J529Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3J529_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00360Primary locus identifier stored in the genes table.
Old locus tagDWY69_00360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval95 474-98 311 nt2 838 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 966-98 311 ntGCF_003435265::NZ_QVLU01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span93 966-98 311 nt4 346 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 966 nt98 311 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWY69_RS00350GCF_003435265#DWY69_RS00350
HKClassic
93 966-94 790 nt · Reverse (-)
DWY69_RS00355GCF_003435265#DWY69_RS00355
RROmpR
94 780-95 436 nt · Reverse (-)
DWY69_RS00360GCF_003435265#DWY69_RS00360
HKHybridCurrent focus
95 474-98 311 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00360The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0335375
Simplified PFAM architecture for HKOC_0335375
PFAM domain coverage: 503 / 945 aa (53.2%)
1 aa945 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[74-278] | HisKA[573-639] | HATPase_c[685-798] | Response_reg[823-939]
- Domain count: 4
- Matched identifier: HKOC_0335375
- Positioned domains: SBP_bac_3 74-278 ; HisKA 573-639 ; HATPase_c 685-798 ; Response_reg 823-939
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key